SimuRank

the scientific simulation, molecular modeling, and data analysis software directory

Category: 3D Visualization Software

YASARA

YASARA is a molecular-modeling and simulation program with an intuitive user interface powered by PVL (Portable Vector Language), a new development framework that provides enhanced performance. PVL allows to visualize even the largest proteins and enables true interactive real-time simulations with highly accurate force fields on standard PCs, by making use of GPUs. You can […]

CrystalMaker

If you want to build from scratch any crystal structure, one of the best software package available out-there is CrystalMaker. Apart from using it for molecular and crystal engineering purposes, it also offers incredible 3D graphics. Those interested only in visualization of structures should try the free version of CrystalViewer License: Commercial License OS: Linux, […]

Jmol

Jmol is an open-source molecular viewer for three-dimensional chemical structures that run as an individual program on your desktop or even as an interactive web browser applet (used as such by an increased number of specialized websites). It is versatile, fast and has a very convenient feature: if one knows the pdb, SMILES, InChl, CAS […]

VMD

VMD is designed for modeling, visualization, and analysis of biological systems such as proteins, nucleic acids, lipid bilayer assemblies, etc. It may be used to view more general molecules, as VMD can read standard Protein Data Bank (PDB) files and display the contained structure. VMD provides a wide variety of methods for rendering and coloring […]

GaussView

GaussView is an advanced and powerful graphical interface developed for Gaussian. It can import, build, and visualize molecular structures. It can be used to set up, launch, monitor and control Gaussian calculations, and retrieve and view the results. It also includes many new features designed to make working with large systems. Check out the video […]

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